YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S39AD_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMIQTAVAQA KTAPAGPGPW SIKDLVDLQY LDELMSIDNL DVWFCSLVGS IAIGLSGIFP  60
   61 LLVIPIEAGT ALKTEAGCQK LKKLLSFAIG GLLGDVFLHL LPEAWAYTSS PGGSHRHYCT 120
  121 QGLWVIGGLM SFLTLEKMFP DEVGDPETKT SFQRTTSSSS DLSSQFSVSP QTNGICSNNN 180
  181 SDSKPKTDIS PYTQPEKIKT SGYLNLLANC IDNFTHGLAV AGSFLVSRKV GFLTTFAILL 240
  241 HEIPHEVGDF AILLRAGFDR WKAARMQLST ALGGVLGACF ALCSQSQHGA ENATTWILPF 300
  301 TSGGFLYIAL VNVVPDLLEE TNPRNSLLQV LLLFSGIGVM ALLSIAMD

Type	Start	End	Confidence
Non-Cytoplasmic	1	41	0.90
Transmembrane Helix	42	64	0.90
Cytoplasmic	65	83	0.83
Transmembrane Helix	84	102	0.90
Non-Cytoplasmic	103	116	0.73
Transmembrane Helix	117	135	0.82
Cytoplasmic	136	265	0.90
Transmembrane Helix	266	286	0.89
Non-Cytoplasmic	287	294	0.72
Transmembrane Helix	295	315	0.92
Cytoplasmic	316	325	0.82
Transmembrane Helix	326	347	0.92
Non-Cytoplasmic	348	348	0.94