YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54261809, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.93
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTGNRQQC QIITATGALF LAVGGILLLV LPSEDIKGSP GFMYGIVLDA GSSHTSMFIY  60
   61 KWPADKQNGT GIVSQHSECH AKGGGISSYA GVKGGAARSL KECMDKAMRE IPTVRYKHTP 120
  121 VYLGATAGMR LLNISKPKES AEVLKEVEEK LKSYPFSFKG ASILTGQEEG AYGWITVNYL 180
  181 LENYIKYGFV GQWITPGRDT VGALDFGGAS TQITFVTKQT VENKDDLMKL RLYGRDYQIY 240
  241 THSFLCYGRD QVLLRLLAHL ITIQGSDTSI IHPCYPADYS SSIKLSSVFG TPCVEKQTSY 300
  301 NPDGELQIKG TGNYNQCLGN VSQLFSFSSC SYSKCSFDGV FQPNITGNFM AFSAFFYTHS 360
  361 FLQEATGIKI WTPAHLEDAA RVICNMSLQE MGKKSQDNES RLKDYCAVSV FVRALLVNGY 420
  421 SFNDRTFPQI SFQKKAGDTS VGWSLGYMLS LSNLLPAENV ALKKSLRSGA WSFLIFLFSI 480
  481 LLTSALIFLF RAICHKNKDD VV

Type	Start	End	Confidence
Cytoplasmic	1	11	0.75
Transmembrane Helix	12	31	0.88
Non-Cytoplasmic	32	468	0.68
Transmembrane Helix	469	493	0.86
Cytoplasmic	494	502	0.64