YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52218918, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.95
Transmembrane Helix	37	58	0.86
Non-Cytoplasmic	59	67	0.79
Transmembrane Helix	68	86	0.94
Cytoplasmic	87	117	0.80
Transmembrane Helix	118	139	0.86
Non-Cytoplasmic	140	193	0.96
Transmembrane Helix	194	214	0.93
Cytoplasmic	215	222	0.88
Transmembrane Helix	223	245	0.86
Non-Cytoplasmic	246	275	0.87
Transmembrane Helix	276	294	0.96
Cytoplasmic	295	304	0.84
Transmembrane Helix	305	328	0.89
Non-Cytoplasmic	329	360	0.84
Transmembrane Helix	361	378	0.88
Cytoplasmic	379	407	0.86
Transmembrane Helix	408	430	0.90
Non-Cytoplasmic	431	441	0.80
Transmembrane Helix	442	463	0.94
Cytoplasmic	464	483	0.97
Transmembrane Helix	484	505	0.93
Non-Cytoplasmic	506	522	0.92
Transmembrane Helix	523	545	0.94
Cytoplasmic	546	575	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIQHDPDLQ FKLAYSDAQS NETGLKTQIR GQWSSKVEFI LAVAGQIIGL GNVWRFPYLC  60
   61 YKNGGGVFFI PYVVFLFACG IPLFLMETAL GQYTSQGSVT CWRKICPLFE GLGYGSQVVV 120
  121 LYSSAYYIII LAWAFFYLFS SFSGELPWAS CRNWWNSENC VEFDRMQGAK NLSFMANASS 180
  181 PVKEFWDVNE LGSVRWELAL CLLLAWVICY FCVWKGVKST GKVVYFTATF PYVMLMVLLI 240
  241 RGLTLPGAID GITFYLYPNP ARLADPQVWM DAGTQIFYSY ALCIGCLTAL GSYNKYNNNC 300
  301 YKDCVYLCLL NSGTSFVAGF AIFSVLGFMA LEQGVDISVV AESGPGLAFI AYPRAVAMMP 360
  361 MAQLWSICFF LMIILLGLDS EFVGLESLMT AITDMNPNFF LQGHRRKLFL LVICIACFLI 420
  421 GLLMVTEGGL YVFQLFDYYS CSGMTLLLFA IAQSICIGWF YGADRLYENI ADMIGYHPLT 480
  481 LMKYCWKYIT PIVCIGTFIF SLVKFTPLKF NNTYEYPWWG YAAGWWFTLS STLLVPIWMI 540
  541 YAILVTPGTL KQRLRVLCTP ASDLPLTSER PKETL