YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52218900, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.89
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLFGFLLIF TVIVSNGAQA EHKDFLFVGC SDMEKEYLFG FDGEELFHSD FIRKEGVATA  60
   61 PDFADPLSFS GGYENSVGQM EVCKQNLATG IKAYNSPQEQ LDPPVTSIYS KDEVVLDKKN 120
  121 TLICHVTGFF PPPVNVSWTK NNDIVSEEIS FSQYRENSDG TFNMFSALKF TPAEGDIYSC 180
  181 TVKHRSIQGQ PNTKTWEVDV ELPSVGPAVF CGVGLVLGLL GVAAGTFFLI KGNNCN

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	205	0.99
Transmembrane Helix	206	230	0.81
Cytoplasmic	231	236	0.84