YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28564337, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMSSKEVNF SCTFDEEFKY ILLPVSYSLV CFFGLILNSV ALWMFITKMR PWKPSTVYMF  60
   61 HLALSDTLYV LSLPMLIYYY ANRSHWPFGV VLCKIVRFLF YANLYCSILF LTCISVHRYL 120
  121 GICHPIRSLT LIKPRHAHMV CGFVWTAVIA CLVPTLILVN TSRNGNSTLC HDTSRPEEFH 180
  181 NFVTYNSVVM VLLFILPFLV IVVCYCLMAR ALCQPRKGLA QNQQSSSRKK SIKLIIVVLV 240
  241 VFAICFVPFH ITRTLYYAYR IFDADCKTLN IVNFSYKITR PLASVNSCLD PILYFLAGDH 300
  301 YRSKLLRVLT RQTPNTRSTA YEYAPNGKNI ELAFKNPDAQ AGSDSRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	22	0.94
Transmembrane Helix	23	46	0.89
Cytoplasmic	47	56	0.93
Transmembrane Helix	57	80	0.90
Non-Cytoplasmic	81	97	0.93
Transmembrane Helix	98	120	0.90
Cytoplasmic	121	136	0.93
Transmembrane Helix	137	159	0.90
Non-Cytoplasmic	160	188	0.95
Transmembrane Helix	189	212	0.90
Cytoplasmic	213	231	0.95
Transmembrane Helix	232	252	0.94
Non-Cytoplasmic	253	347	0.81