YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|149034755, gi...
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQLSLSWLG LGPEVAFPWQ TLLLFGASWI LAQILTQIYA AYRNFRRLRG FPQPPKRNWL  60
   61 MGHVGMVTPT EQGLKELTRL VGTYPQGFLM WIGPMVPVIT LCHSDIVRSI LNASAAVALK 120
  121 DVIFYTILKP WLGDGLLVSA GDKWSRHRRM LTPAFHFNIL KPYVKIFNDS TNIMHAKWKR 180
  181 LISEGSSRLD MFEHVSLMTL DSLQKCVFSF DSNCQEKSSE YIAAILELSA LVAKRHQQPL 240
  241 LFMDLLYNLT PDGMRFHKAC NLVHEFTDAV IRERRRTLPD QGLDEFLKSK AKSKTLDFID 300
  301 VLLLTKDEDG KELSDEDIRA EADTFMFEGH DTTASGLSWI LYNLAKHPEY QERCRQEVQE 360
  361 LLRDRDPEEI EWDDLAQLPF LTMCIKESLR LHPPVTVISR CCTQDILLPD GRTIPKGIIC 420
  421 LISIFGIHHN PSVWPDPEVY NPFRFDPENI KDSSPLAFIP FSAGPRNCIG QTFAMSEMKV 480
  481 ALALTLLRFR LLPDDKEPRR QPELILRAEG GLWLRVEPLS AGAQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.68
Transmembrane Helix	19	41	0.80
Cytoplasmic	42	86	0.65
Transmembrane Helix	87	101	0.60
Non-Cytoplasmic	102	524	0.82