YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|52138578, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTPISQVRMR KGSAHTAAQP GRLGLHPAGA TAHACRGMTS IRARPGLTSA MLGSRAAGFA  60
   61 RGLRALALAW LPGWRGRSFA LARAAGAPHG GDLQPPACPE PRGRQLSLSA AAVVDSAPRP 120
  121 LQPYLRLMRL DKPIGTWLLY LPCTWSIGLA AEPGCFPDWY MLSLFGTGAI LMRGAGCTIN 180
  181 DMWDQDYDKK VTRTANRPIA AGDISTFQSF VFLGGQLTLA LGVLLCLNYY SIALGAGSLL 240
  241 LVITYPLMKR ISYWPQLALG LTFNWGALLG WSAIKGSCDP SVCLPLYFSG VMWTLIYDTI 300
  301 YAHQDKRDDV LIGLKSTALR FGENTKPWLS GFSVAMLGAL SLVGVNSGQT APYYAALGAV 360
  361 GAHLTHQIYT LDIHRPEDCW NKFISNRTLG LIVFLGIVLG NLWKEKKTDK TKKGIENKIE 420
  421 N

Type	Start	End	Confidence
Cytoplasmic	1	133	0.80
Transmembrane Helix	134	155	0.81
Non-Cytoplasmic	156	160	0.68
Transmembrane Helix	161	180	0.54
Cytoplasmic	181	198	0.49
Transmembrane Helix	199	224	0.58
Non-Cytoplasmic	225	225	0.37
Transmembrane Helix	226	245	0.84
Cytoplasmic	246	252	0.75
Transmembrane Helix	253	274	0.81
Non-Cytoplasmic	275	281	0.69
Transmembrane Helix	282	301	0.76
Cytoplasmic	302	327	0.84
Transmembrane Helix	328	348	0.86
Non-Cytoplasmic	349	382	0.78
Transmembrane Helix	383	403	0.86
Cytoplasmic	404	421	0.86