YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PAG15_RAT
Protein type:	Globular with Signal Peptide
Type Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRHLCICRE IQLRSGLLFP FLLLMMLADL ALPAQRHPPV VLVPGDLGNQ LEAKLDKPKV  60
   61 VHYLCSKRTD SYFTLWLNLE LLLPVIIDCW IDNIRLVYNR TSRTTQFPDG VDVRVPGFGE 120
  121 TFSLEFLDPS KRNVGSYFYT MVESLVGWGY TRGEDVRGAP YDWRRAPNEN GPYFLALQEM 180
  181 IEEMYQMYGG PVVLVAHSMG NMYMLYFLQR QPQAWKDKYI QAFVSLGAPW GGVAKTLRVL 240
  241 ASGDNNRIPV IGPLKIREQQ RSAVSTSWLL PYNHTWSHEK VFVYTPTANY TLRDYHRFFQ 300
  301 DIGFEDGWFM RQDTQGLVEA LVPPGVELHC LYGTGVPTPN SFYYENFPDR DPKICFGDGD 360
  361 GTVNLESVLQ CQAWQSRQEH KVSLQELPGS EHIEMLANAT TLAYLKRVLL EEP

Type	Start	End	Confidence
Signal Peptide	1	33	0.61
N-region	1	24
H-region	25	30
C-region	31	33
Cleavage Site	33	34
Non-Cytoplasmic	34	413	0.91