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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: GRID2_DANRE
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.86
Topology Confidence: 0.55
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKVFPAVLFL ITFWSLEWEP VLPDSIIHIG AIFDESAKKD DEVFRMAVAD LNLNNEILET  60
   61 EKITVSVEFV DGNNPFQAVQ EACELMNRGI LALVSSIGCM SAGSLQSLAD AMHIPHLFIQ 120
  121 RAPAGTPRSS CPPTTRAQPD DYTLFVRPPV YLNDVIFQVV MEYTWQKFII FYDTDYDIRG 180
  181 IENFLDQTSQ QGMDVSLQKV ESNINMMITG MFRTMRVEEL HRYRDTLRRA VLFMSPATAK 240
  241 AFITEVVETN LVAFDCQWII INEEISDMDV QELVMKSIGR LTLVRQTFPL PQNTSQRCVR 300
  301 NNHRINTSLC DPKDPKAQML EITNRYIYDT VLLLANTFHR KLEDRKWHSM ASLSCIRKGS 360
  361 KPWQGGKSML ETVKKGGVSG LTSLLEFNDN GSNPNIHFEI LGTNYGEDRG RGVSRLATWD 420
  421 PIHGLNGTLT DRKLENNMRG VVLRVVTVLE EPFVMVSENV LGKPKKYQGF SIDVLDALAN 480
  481 YLGFKYEIYV APDHKYGSQQ ADGTWNGLIG ELVFKRADVG LSALTITPER ESVVDFTTRY 540
  541 MDYSVGVLLR KAERTVDMFA CLAPFDLSLW ACIAGTVLLV GTLVYLLNWL NPPRLPMGSV 600
  601 SSTTLYNSMW FVYGSFVQQG GEVPYTTLAT RMMMGVWWLF ALIVISSYTA NLAAFLTISR 660
  661 IENSIQSLQD LAKQTDLPYG TVLDSAVYDQ VRSKGMNPFE RDPMYSQMWR MINRTGGAEN 720
  721 NVEESKEGIR KVKYGRFAFV WDAAVLEYVA INDEDCSLYT VSNNVADRGY GMAMQHGSPY 780
  781 RDIFSQRILE LQQNGDMDIL KLKWWPRDSP CDLYSPVGTR KSGSALDIHS FAGVFFVLAA 840
  841 GVVLSCLIAT VETWWTRRKG SRVPSKEDDK EIDLEHLHHR VNSLCTEDES PHKQFSTSSI 900
  901 DLTPLDMDSL PAARQALEQI SDFRNTHITT TTFIPEQIQT LSRSLSAKAA AGFAFGAVQD 960
  961 HRTGGPFRQR APNGGFFRSP VKTMSSIPYQ PTPAPNFSYG NDPDRGTSI

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle