YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|51262134, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYYGSSYRI VNVDSKYPGY PPEHAIAEKR RARRRLLHKD GSCNVYFKHI FGEWGSYMVD  60
   61 IFTTLVDTKW RHMFVIFSLS YILSWLIFGS IFWLIALHHG DLLSDPDITP CVDNVHSFTA 120
  121 AFLFSLETQT TIGYGYRCVT EECSVAVLTV ILQSILSCII NTFIIGAALA KMATARKRAQ 180
  181 TIRFSYFALI GMRDGKLCLM WRIGDFRPNH VVEGTVRAQL LRYSEDSEGR MTMAFKDLKL 240
  241 VNDQIILVTP VTIVHEIDHE SPLYALDRKA VAKDNFEILV TFIYTGDSTG TSHQSRSSYV 300
  301 PREILWGHRF HDVLEVKRKY YKVNCLQFEG SVEVYAPFCS AKQLDWKDQQ LNNLEKTSPA 360
  361 RGSCTSDTNT RRRSFSAVAM VSSCENPEET SLSPQDECKE VPYQKALLTL NRISMESQM

Type	Start	End	Confidence
Cytoplasmic	1	73	0.97
Transmembrane Helix	74	97	0.89
Non-Cytoplasmic	98	149	0.89
Transmembrane Helix	150	170	0.88
Cytoplasmic	171	419	0.80