YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54261805, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSCGALDTF RRCVSSCSCN NSIMAAFKGV WTQEFWRAVS GEFLAMIIFV LLSLGSTINW  60
   61 GAKQENPPPA DLVLISLCFG LSIATLVQCF GHISGAHINP AVTVAMVATR KLSLAKGVFY 120
  121 LLAQCLGAVV GAAILYGVTP ASVRGGMGVT SVNEEISAGH AIVIELIITF ELVFTVFATC 180
  181 DPKRNDLKGS AALAIGLSVC IGHLFAIPYT GASMNPARSF GPAVIMVKWQ DHWVYWVGPL 240
  241 IGGILAAAVY EYLFCPDPDL KRRYADVLSK SPFQMEPYRV VDTDSYPSDQ AQLMAKQAAL 300
  301 RVLDLEKKER ESTGEVLSSV

Type	Start	End	Confidence
Cytoplasmic	1	37	0.91
Transmembrane Helix	38	60	0.85
Non-Cytoplasmic	61	71	0.81
Transmembrane Helix	72	96	0.85
Cytoplasmic	97	116	0.86
Transmembrane Helix	117	138	0.93
Non-Cytoplasmic	139	157	0.90
Transmembrane Helix	158	179	0.93
Cytoplasmic	180	188	0.89
Transmembrane Helix	189	212	0.87
Non-Cytoplasmic	213	232	0.96
Transmembrane Helix	233	254	0.95
Cytoplasmic	255	320	0.99