YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|50979198, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIVLAPAWSP TASLLLLLLL SPGLRGTPDC SFSHSPISST FAVTIRKLSD YLLQDYPVTV  60
   61 ASNLQDDELC GAFWRLVLAQ RWMVRLQAVA GSQMQILLEA VNTEIHFVTF CAFQPLPSCL 120
  121 RFVQTNISHL LQDTSQQLAA LKPWITRRNF SGCLELQCQP DSSTLVPPRS PGALEATALP 180
  181 APQAPRLLLL LLLPVALLLM STAWCLHWRR RRRRRSPYPG EQRTLRPSER SHLPEDTELG 240
  241 PGGSQLETGP FLDHAAPLAP SPGSRQRPPP TPPKPAPAPP LPLCTKSLPP RNCI

Type	Start	End	Confidence
Signal Peptide	1	26	0.99
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	186	0.99
Transmembrane Helix	187	208	0.92
Cytoplasmic	209	294	0.99