YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5042355, gi\|5...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPENSGRAG LALPNPQGPS SAPEIELSEV PLRENPLLEK AGSSPPCHTW LMFLKRELEF  60
   61 LGVTQILIAL VCLCFGIIVC SVINISEFKE DIFSSFKAGY PFWGAVFFAI SGFLPIMSEK 120
  121 KHATYLAWGS LGANTVQIAA GIGIFIYGQP ADLQRSSAYI HNCQQAPRDD FCFVACFSTE 180
  181 IVAMILFLTI LGFCSAVSLT IYGVGELVQG NKIVEDRLYE ELNIYSPIYS ELEDKAEESS 240
  241 PVDS

Type	Start	End	Confidence
Cytoplasmic	1	60	0.97
Transmembrane Helix	61	85	0.89
Non-Cytoplasmic	86	97	0.87
Transmembrane Helix	98	117	0.93
Cytoplasmic	118	124	0.87
Transmembrane Helix	125	147	0.92
Non-Cytoplasmic	148	180	0.91
Transmembrane Helix	181	204	0.87
Cytoplasmic	205	244	0.94