YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33341748, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAKEKQHLL DARPAIRSYT GSLWQEGAGW IPLPRPGLDL QAIELAAQSN HHCHAQKGPD  60
   61 SHCDPKKGKA QRQLYVASAI CLLFMIGEVV GGYLAHSLAV MTDAAHLLTD FASMLISLFS 120
  121 LWMSSRPATK TMNFGWQRAE ILGALVSVLS IWVVTGVLVY LAVERLISGD YEIDGGTMLI 180
  181 TSGCAVAVNI IMGLTLHQSG HGHSHGTTNQ QEENPSVRAA FIHVIGDFMQ SMGVLVAAYI 240
  241 LYFKPEYKYV DPICTFVFSI LVLGTTLTIL RDVILVLMEG TPKGVDFTAV RDLLLSVEGV 300
  301 EALHSLHIWA LTVAQPVLSV HIAIAQNTDA QAVLKTASSR LQGKFHFHTV TIQIEDYSED 360
  361 MKDCQACQGP SD

Type	Start	End	Confidence
Cytoplasmic	1	73	0.99
Transmembrane Helix	74	96	0.93
Non-Cytoplasmic	97	103	0.83
Transmembrane Helix	104	123	0.92
Cytoplasmic	124	140	0.87
Transmembrane Helix	141	163	0.92
Non-Cytoplasmic	164	176	0.87
Transmembrane Helix	177	198	0.90
Cytoplasmic	199	218	0.91
Transmembrane Helix	219	242	0.89
Non-Cytoplasmic	243	248	0.85
Transmembrane Helix	249	270	0.86
Cytoplasmic	271	372	0.84