YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68470470, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	81	0.98
Transmembrane Helix	82	102	0.91
Non-Cytoplasmic	103	108	0.61
Transmembrane Helix	109	143	0.69
Cytoplasmic	144	155	0.72
Transmembrane Helix	156	179	0.78
Non-Cytoplasmic	180	189	0.81
Transmembrane Helix	190	210	0.92
Cytoplasmic	211	217	0.85
Transmembrane Helix	218	240	0.90
Non-Cytoplasmic	241	262	0.89
Transmembrane Helix	263	283	0.93
Cytoplasmic	284	301	0.91
Transmembrane Helix	302	323	0.92
Non-Cytoplasmic	324	355	0.89
Transmembrane Helix	356	377	0.85
Cytoplasmic	378	398	0.93
Transmembrane Helix	399	420	0.92
Non-Cytoplasmic	421	426	0.94
Transmembrane Helix	427	449	0.90
Cytoplasmic	450	469	0.90
Transmembrane Helix	470	492	0.86
Non-Cytoplasmic	493	509	0.81
Transmembrane Helix	510	530	0.93
Cytoplasmic	531	582	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHKKETNDT FVQLNRSPST GEQKSSGIWS SIKDSFKPAL PQDKLTGVDD IPDRELTDIE  60
   61 RININAANSN LQRKLKTRHL QMIAIGSSIG TGLFVGTGGA LSTGGPAAIV LAWAISAISV 120
  121 FMTMQGLGEL AVAFPVSGGF NLYASKFLEP GIGFAVGWNY FLQFFVLLPL ELVAGAITIK 180
  181 YWNASINSDV FVIIFWFVVL VITMLGVRWY GEAELVFCTI KVIAVIGFII LGIVLICGGG 240
  241 PNHEFIGGKY WREPGPFANS FKGFASSLIT AAFSFGGTEM IALTASESSN VRHALPKAIK 300
  301 QVFWRIVIFY LGSIIMIATL VPYNDKRLLG SSSVDVTASP FTIAIVNGGI KGLPSVINAV 360
  361 ILISVLSVGN ASVYATSRTL NSLAEQGMAP KWTGYIDRAG RPLFAILITN VFGLFALIAA 420
  421 DNEKQVVAFN WLLALSGLSS IFTWMSINLS HIRFRRAMKV QNRSLTELPF VAQSGVWGSY 480
  481 FGLTLNILYL IAQFYIGLFP VGGKPNAYDF FLAYLGVPVI LASWIGYKIW KRDWTLFIRA 540
  541 KDIDLDTGRI NVDLDLLQQE IAEEKAQLAE KPFYIRIYRF WC