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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|34334899
Protein type: Transmembrane
Type Confidence: 0.82
Topology Confidence: 0.53
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QPKDYVQIMC NLTDTTDYQQ LPKKLRIGGV DRVQMRRCML PGHTPIASIL DYLGIVSPTT  60
   61 LIFESDNLGM NITRQHLDRL HGLKRFRFTT RRLTHIPANL LTDMRNLSHL ELRANIEEMP 120
  121 SHLFDDLENL ESIEFGSNKL RQMPRGIFGK MPKLKQLNLW SNQLHNLTKH DFEGATSVLG 180
  181 IDIHDNGIEQ LPHDVFAHLT NVTDINLSAN LFRSLPQGLF DHNKHLNEVR LMNNRVPLAT 240
  241 LPSRLFANQP ELQILRLRAE LQSLPGDLFE HSTQITNISL GDNLLSTLPA TLLEHQVNLL 300
  301 SLDLSNNRLT HLPDSLFAHT TNLTDLRLED NLLTGISGDI FSNLGNLVTL VMSRNRLRTI 360
  361 DSRAFVSTNG LRHLHLDHND IDLQQPLLDI TLQTQINSPF GDMHGLLTLN LRNNSIRFVY 420
  421 NDWKNTMLQL RELDLSYNNI SSLRYEDLAF LSQNRLHVNM THNKIRRIEL PEDVYLGEGY 480
  481 NNNLVHVDLN DNPLVCDCMI LWFIQLVRGV HKPQYSRQFK LRADRLVCSQ PNAMEGTPVR 540
  541 QIEPQTLICP LDFSDDPRER KCPRGCNCHV RTYDKALVIN CHSGNLTHVP RLPNLHKNMQ 600
  601 LMELHLENNT LVRLPSANTP GYESVTSLHL AGNNLTSIDV DQLPTNLTHL DISWNHLQML 660
  661 NATVLGFLNR TMKWRSVKLS GNPWMCDCTA KPLLLFTQDN FERIGDRNEM MCVNAEMPTR 720
  721 MVELSTNDIC PAEKGVFIAL AVVIALTGLL AGFTAALYYK FQTEIKIWLY AHNLLLWFVT 780
  781 EEDLDKDKKF DAFISYSHKD QSFIEDYLVP QLEHGPQKFQ LCVHERDWLV GGHIPENIMR 840
  841 SVADSRRTII VLSQNFIKSE WARLEFRAAH RSALNEGRSR IIVIIYSDIG DVEKLDEELK 900
  901 AYLKMNTYLK WGDPWFWDKL RFALPHRRPV GNIGNGALIK TALKGSTDDK LELIKPSPVT 960
  961 PPLTTPPAEA TKNPLVAQLN GVTPHQAIMI ANGKNGLTNL YTPNGKSHGN GHINGAFIIN1020
 1021 TNAKQSDV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle