YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28849822
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEERREFEN FKIVIFQSLA VLFSAYIVSL FKEAEYTSQT IAILYLLHFI VFYISNFSFK  60
   61 FYTRGYLEEL LQTIKYNLVF SIAITFTSFM LKEPFSVSRR GMVYFFLINS LAIYLMDSII 120
  121 KKYKQSIYSR FKNRKKLFLI TATSRLEKAY ERLTSSKYST RELVGVTIMD DTTFSQAQVA 180
  181 IVAPQDMVDF VTQEVVDEVF INLPSENYDI GDLVSRFESM GIDVSVNLNA FDFLSLGEKR 240
  241 IQEVAGMSVV TFSTNFYKQT HVIAKRCLDI VGALFGLLIC GLVSIVLVPI IRKDGGPAFF 300
  301 VQKRVGKNGR FFKFYKFRSM RVDAEEIKKE LMEHNTMTGG MFKMDNDPRV TPIGRFIRKT 360
  361 SLDELPQFYN VLIGDMSLVG TRPPTIDEYR NYTPEQKRRL SFKPGITGLW QVSGRSAITD 420
  421 FDEVVKLDLA YMDGWTIWRD IKILLKTIKV VFRKEGAK

Type	Start	End	Confidence
Cytoplasmic	1	10	0.93
Transmembrane Helix	11	30	0.92
Non-Cytoplasmic	31	40	0.75
Transmembrane Helix	41	62	0.88
Cytoplasmic	63	72	0.91
Transmembrane Helix	73	91	0.92
Non-Cytoplasmic	92	100	0.76
Transmembrane Helix	101	120	0.91
Cytoplasmic	121	269	0.96
Transmembrane Helix	270	291	0.92
Non-Cytoplasmic	292	458	0.96