YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34305301, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWAGLYAVL SGVNRHSTAI GRIWLSVIFI FRIMVLVVAA ESVWGDEKSA FTCNTQQPGC  60
   61 NSVCYDHFFP ISHIRLWALQ LILVTTPALL VAMHVAYQQH QEKKLLVMTG HGDAKHLEEV 120
  121 KKHKMRIAGS LWWTYVCSVV FRLIFEAVFM YLFYMIYPGY QMVRLVKCEA YPCPNTVDCF 180
  181 VSRPTEKTIF TVFMLVTSSV CIVLNMAELV YLVVRACTRH SHHNSNPSSG KGSFYGHKIS 240
  241 SEYKQNEINQ LLSEQDGSLK DMLRRNPGLQ EKGDRCSAC

Type	Start	End	Confidence
Cytoplasmic	1	19	0.97
Transmembrane Helix	20	40	0.93
Non-Cytoplasmic	41	75	0.94
Transmembrane Helix	76	97	0.93
Cytoplasmic	98	130	0.98
Transmembrane Helix	131	153	0.95
Non-Cytoplasmic	154	189	0.96
Transmembrane Helix	190	213	0.89
Cytoplasmic	214	279	0.98