YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	XYLL1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	43	0.95
Transmembrane Helix	44	67	0.74
Non-Cytoplasmic	68	92	0.80
Transmembrane Helix	93	115	0.90
Cytoplasmic	116	124	0.81
Transmembrane Helix	125	148	0.88
Non-Cytoplasmic	149	151	0.71
Transmembrane Helix	152	170	0.87
Cytoplasmic	171	186	0.77
Transmembrane Helix	187	207	0.92
Non-Cytoplasmic	208	213	0.76
Transmembrane Helix	214	234	0.90
Cytoplasmic	235	301	0.97
Transmembrane Helix	302	320	0.86
Non-Cytoplasmic	321	342	0.74
Transmembrane Helix	343	365	0.82
Cytoplasmic	366	372	0.89
Transmembrane Helix	373	394	0.94
Non-Cytoplasmic	395	400	0.85
Transmembrane Helix	401	425	0.88
Cytoplasmic	426	436	0.86
Transmembrane Helix	437	456	0.95
Non-Cytoplasmic	457	463	0.77
Transmembrane Helix	464	486	0.94
Cytoplasmic	487	503	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFDPENQSI SSVGQVVGDS SSGGITAEKE PLLKENHSPE NYSVLAAIPP FLFPALGALL  60
   61 FGYEIGATSC AIMSLKSPTL SGISWYDLSS VDVGIITSGS LYGALIGSIV AFSVADIIGR 120
  121 RKELILAAFL YLVGAIVTVV APVFSILIIG RVTYGMGIGL TMHAAPMYIA ETAPSQIRGR 180
  181 MISLKEFSTV LGMVGGYGIG SLWITVISGW RYMYATILPF PVIMGTGMCW LPASPRWLLL 240
  241 RALQGQGNGE NLQQAAIRSL CRLRGSVIAD SAAEQVNEIL AELSLVGEDK EATFGELFRG 300
  301 KCLKALTIAG GLVLFQQITG QPSVLYYAPS ILQTAGFSAA ADATRISILL GLLKLVMTGV 360
  361 SVIVIDRVGR RPLLLCGVSG MVISLFLLGS YYMFYKNVPA VAVAALLLYV GCYQLSFGPI 420
  421 GWLMISEIFP LKLRGRGISL AVLVNFGANA LVTFAFSPLK ELLGAGILFC AFGVICVVSL 480
  481 FFIYYIVPET KGLTLEEIEA KCL