YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	AVP2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	40	0.99
Transmembrane Helix	41	61	0.92
Non-Cytoplasmic	62	66	0.81
Transmembrane Helix	67	89	0.90
Cytoplasmic	90	119	0.97
Transmembrane Helix	120	140	0.89
Non-Cytoplasmic	141	157	0.86
Transmembrane Helix	158	182	0.90
Cytoplasmic	183	201	0.96
Transmembrane Helix	202	226	0.92
Non-Cytoplasmic	227	245	0.86
Transmembrane Helix	246	267	0.88
Cytoplasmic	268	347	0.86
Transmembrane Helix	348	370	0.68
Non-Cytoplasmic	371	391	0.44
Transmembrane Helix	392	413	0.89
Cytoplasmic	414	419	0.44
Transmembrane Helix	420	442	0.91
Non-Cytoplasmic	443	454	0.42
Transmembrane Helix	455	476	0.45
Cytoplasmic	477	477	0.29
Transmembrane Helix	478	497	0.84
Non-Cytoplasmic	498	509	0.55
Transmembrane Helix	510	532	0.88
Cytoplasmic	533	575	0.62
Transmembrane Helix	576	594	0.86
Non-Cytoplasmic	595	614	0.62
Transmembrane Helix	615	636	0.86
Cytoplasmic	637	685	0.69
Transmembrane Helix	686	705	0.93
Non-Cytoplasmic	706	715	0.56
Transmembrane Helix	716	738	0.88
Cytoplasmic	739	802	0.64

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMDEDVEQA SLMSFNDRPR AFPNMRSKTY SPLIFRIIRK LNVRVLSIIL LFCFGAIFYM  60
   61 GASTSPIIVF VFTVCIISFL LSIYLTKWVL AKDEGPPEMV EISDAIRDGA EGFFRTQYST 120
  121 ISKMAILLAF VILCIYLFRS LTPQQEAAGL GRAMSAYITV AAFLLGALCS GIAGYVGMWV 180
  181 SVRANVRVSS AARRSAREAL QIAVRAGGFS ALVVVGMAVI GIAILYSTFY VWLGVGSPGS 240
  241 MNVTDLPLLL VGYGFGASFV ALFAQLGGGI YTKGADVGAD LVGKVEQGIP EDDPRNPAVI 300
  301 ADLVGDNVGD CAARGADLFE SIAAEIISAM ILGGTMAKKC KIEDPSGFIL FPLVVHSFDL 360
  361 IISSIGILSI KGTRDASVKS PVEDPMAVLQ KGYSLTIILA VITFGASTRW LLYTEQAPSA 420
  421 WFNFALCGLV GIITAYIFVW ISKYYTDYKH EPVRTLALAS STGHGTNIIA GVSLGLESTA 480
  481 LPVLTISVAI ISAYWLGNTS GLVDENGIPT GGLFGTAVAT MGMLSTAAYV LTMDMFGPIA 540
  541 DNAGGIVEMS QQPESVREIT DLLDAVGNTT KATTKGFAIG SAALASFLLF SAYMDEVSAF 600
  601 ANVSFKEVDI AIPEVFVGGL LGAMLIFLFS AWACAAVGRT AQEVVNEVRR QFIERPGIME 660
  661 YKEKPDYSRC VAIVASAALR EMIKPGALAI ASPIVVGLVF RILGYYTGQP LLGAKVVASM 720
  721 LMFATVCGIL MALFLNTAGG AWDNAKKYIE TGALGGKGSE AHKAAVTGDT VGDPFKDTAG 780
  781 PSIHVLIKML ATITLVMAPV FL