YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|30693914, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MARVCLPCSF LRTSTLSILF RSPILSTTAA ISFCSSSEFA DSVAKDDSKR GPLKPGLYLV  60
   61 GTPIGNLEDI TLRAIRVLRS ADVILSEDTR HSGKLLQYYN IKAQLLSYHK FNEAQREQAV 120
  121 LTRLKQGEIV ALISDAGTPG ISDPGTQLAK MCAKENIDVI PIPGACAVVA ALSASGLETD 180
  181 EFTFVGFLPK HSGTRKERLI VSSNETRTQI FYVPPHKLSQ FLEETTPYFG ESRQCVIARE 240
  241 ITKLHEEFWR GSIAEAKQEF LIRQPKGEIT LLIEGKEETK AENPTESQLE EELRGLISDG 300
  301 HSLSTAVKTV AERTSMRKKE VYSLALKKFG KQIRVEEEDE ADE

Type	Start	End	Confidence
Signal Peptide	1	36	0.86
N-region	1	27
H-region	28	33
C-region	34	36
Cleavage Site	36	37
Non-Cytoplasmic	37	343	0.99