YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SELT_ARATH
Protein type:	Transmembrane
Type Confidence:	0.56
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKTQLILLG LPIFLLCSDL FNLFTPPPPK SQHQSPPSIS ETLDFPAQKS TGVGYGNTVE  60
   61 INFCISCSYK GTAVSMKKML ESVFPGLDVV LANYPAPAPK RILAKVVPVA QVGVIGLIMG 120
  121 GEQIFPMIGI AQPPAWYHSL RANRFGSMAS TWLLGNFLQS FLQSSGAFEV SCNGELVFSK 180
  181 LKEGRFPGEI ELRDLISGTM TKPFVTGSY

Type	Start	End	Confidence
Cytoplasmic	1	6	0.43
Transmembrane Helix	7	23	0.39
Non-Cytoplasmic	24	209	0.75