YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	YSL8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.99
Transmembrane Helix	72	92	0.94
Non-Cytoplasmic	93	98	0.82
Transmembrane Helix	99	119	0.95
Cytoplasmic	120	139	0.93
Transmembrane Helix	140	163	0.92
Non-Cytoplasmic	164	183	0.95
Transmembrane Helix	184	205	0.92
Cytoplasmic	206	244	0.97
Transmembrane Helix	245	265	0.90
Non-Cytoplasmic	266	295	0.89
Transmembrane Helix	296	321	0.84
Cytoplasmic	322	422	0.78
Transmembrane Helix	423	444	0.91
Non-Cytoplasmic	445	451	0.57
Transmembrane Helix	452	473	0.90
Cytoplasmic	474	481	0.48
Transmembrane Helix	482	497	0.55
Non-Cytoplasmic	498	501	0.51
Transmembrane Helix	502	521	0.81
Cytoplasmic	522	539	0.65
Transmembrane Helix	540	563	0.91
Non-Cytoplasmic	564	600	0.67
Transmembrane Helix	601	619	0.89
Cytoplasmic	620	635	0.51
Transmembrane Helix	636	660	0.80
Non-Cytoplasmic	661	670	0.62
Transmembrane Helix	671	697	0.66
Cytoplasmic	698	724	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKGGLTPDR DRQIEEHELQ ETGISPDIER LKRNINATPY QREEEEEDRE EQEESVEGIF  60
   61 ESREVPSWKK QLTIRAFVVS FALSILFSFI VMKLNLTTGI IPSLNVSAGL LGFFFVKTWT 120
  121 KMLHKSGLLK QPFTRQENTV IQTCVVASSG IAFSGGFGTY LFAMSHRIAD QSGDVARGVK 180
  181 DPSLGWMIAF LFVVSFLGLF SVVPLRKIMI IDFKLPYPSG TATAHLINSF HTPQGAKLAK 240
  241 KQVRVLGKFF SFSFFWGFFQ WFFTAGENCG FNSFPTFGLR AYQYKFYFDF SATYVGVGMI 300
  301 CPYIINISLL LGGILSWGLM WPLIETRKGD WFPSNVDSSS MNGLQAYKVF IAVATILGDG 360
  361 LYNFCKVLIR TFSGLISQIR GKAGSRSSLA HKEDPPASPA SPLTPRISYD DQRRTRFFLK 420
  421 DQIPSWFAVG GYVVISAVST AILPHMFSQL RWYYIIVIYI FAPILAFCNA YGAGLTDWSL 480
  481 ASTYGKLAIF TIGAWAGSDH GGLLAGLAAC GVMMNIVSTA SDLTQDFKTG YLTLSSPRAM 540
  541 FVSQVIGTAM GCLVSPCVFW LFYKAFDDLG LPNSEYPAPF ATVYRSMAKL GVEGVSSLPR 600
  601 DCLMLCYVFF GVAILINLIK DCLGNRWGRF VPLPMAMAIP FFLGPYFAID MCVGSFILFV 660
  661 WERLDAPKAE AFATAVASGL ICGDGIWTLP SSVLAIAGVK PPICMKFLSA ATNHRVDKFL 720
  721 QGSS