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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SRBP1_PIG
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.39
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDEPPFTEAA LEQALAEPCE LDAALLTDIE DMLQLINNQD SDFPGLFDAP YAGVAGGTDP  60
   61 TSPDASSPGS PTPPPSTMSS PLEGFLGGAR TPPPPPVSPT QPAPTPLKMY PSVPAFSPGP 120
  121 GIKEEPVPLT ILQPPTPQPL SGALLPQSLP ALAPPQLSPA PVLGYPSPPG SFSSATPPGS 180
  181 TSQTLPGLPL ASLPGVLPVS VHTQVQSAAP QQLLTATATP VVSPGTTTVT SQIQQVPVLL 240
  241 QPHFIKADSL LLTTMKTDMG TPVKAAGIGS LAPGTAVQAA PLQTLVSGGT ILATVPLVVD 300
  301 TDKLPINRLA AGGKALSSGQ SRGEKRTAHN AIEKRYRSSI NDKIIELKDL VVGTEAKLNK 360
  361 SAVLRKAIDY IRFLQQSNQK LKQENLSLRT AAHKSKSLKD LVSCSSGGRT DVPMEGVKPE 420
  421 VVDTLSPPPS DAGSPSQSSP LSLGSRGSSS GGSGSDSEPD SPVFEDSQMK PEQLPAPHGR 480
  481 GMLDRSRLAL CVLVFLCLSC NPLASLMGSW ALPGPSDATS AYHGPWRSVL GAEGRDGPGW 540
  541 VLWLLPPLVW LTNGLLVLLF LALLFVYGEP VTRPHSDPAV RFWRHRKQAD LDLARGDFAQ 600
  601 AAQQLWLALR ALGRPLPTSH LDLACSLLWN LIRHLLQRLW VGRWLAGRAG GLRRDSALEA 660
  661 DTRTSACDAA LVYHKLHQLH TMGKYPGGHL DAANLALSAL NLAECAGDAL SVAVLAEVYV 720
  721 AAALRVKTSL PRALHFLTRF FLSSARQACL AQSGSVPVAM QWLCHPVGHR FFVDGDWAVC 780
  781 GAPRDSLYSV AGNPVDPLAQ VTQLFREHLL EQALHCVAQP SPGPGSADGD REFSEALGFL 840
  841 QLLNSCCDTA GAPACSFSIA SSTAATAGTD PVAKWWASLT AVVTHWLGRD EEAAERLYPL 900
  901 VEHLPRALQE SERPLPRAAL HSFKAARALL GRGKAESGSA SLAMCEKASG YLQDSLAATP 960
  961 AGSSIDKAMQ LLLCDLLLVA RTSLWQRQKP PPPSQASQGS SSGAQASALE LRGFQRDLSG1020
 1021 LRRLAQSFRP AMRRVFLHEA TARLMAGASP ARTHQLLDRS LRRRAGPCGR GGAAAAAAAE1080
 1081 LEPRPTRREQ AEALLLASCY LPPGFLSAPG QRVGMLAEAA RTLEKLGDRR LLHDCQQMLM1140
 1141 RLGGGTTVTS S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle