YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47523274, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.94
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATPTGPPVS CPKAAVARAL LLGWVLVQVA GATGTTDVIV AYNLTWKSTN FKTILEWEPK  60
   61 PINYVYTVQI SPRLGDWKNK CFHTTDTECD VTDEIMRNVK ETYVARVLSY PADTVLTAQE 120
  121 PPFTNSPPFT PYLDTNLGQP VIQSFEQVGT KLNVTVEAAR TLVRVNGTFL RLRDVFGKDL 180
  181 NYTLYYWRAS STGKKKATTN TNEFLIDVDK GENYCFSVQA VIPSRRVNQK SPESRIECTS 240
  241 QEKAVSRELF LIVGAVVFAV IVFVLVPPVS LYKCRKERAG PNWKGRTPPS NVA

Type	Start	End	Confidence
Signal Peptide	1	32	0.94
N-region	1	23
H-region	24	29
C-region	30	32
Cleavage Site	32	33
Non-Cytoplasmic	33	248	0.99
Transmembrane Helix	249	271	0.91
Cytoplasmic	272	293	0.94