YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47523282, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPAHLLQEEI SSSYTTTTTI TAPSSRVLQN GGGKLEKTPQ YVEEDIRPEM KDDIYDPTYQ  60
   61 DKEGPRPKLE YVWRNIILMS LLHLGALYGI ILIPTCKIYT LLWAFAYYLL SAVGVTAGAH 120
  121 RLWSHRTYKA RLPLRVFLII ANTMAFQNDV YEWARDHRAH HKFSETDADP HNSRRGFFFS 180
  181 HVGWLLVRKH PAVKEKGGLL NMSDLKAEKL VMFQRRYYKP GILLMCFILP TIVPWYCWGE 240
  241 AFPQSLFVAT FLRYAIVLNA TWLVNSAAHL YGYRPYDKTI SPRENILVSL GAVGEGFHNY 300
  301 HHTFPYDYSA SEYRWHINLT TFFIDCMAAL GLAYDRKKVS KAAILARIKR TGDESYKSG

Type	Start	End	Confidence
Cytoplasmic	1	71	0.99
Transmembrane Helix	72	93	0.91
Non-Cytoplasmic	94	102	0.71
Transmembrane Helix	103	123	0.94
Cytoplasmic	124	216	0.97
Transmembrane Helix	217	238	0.89
Non-Cytoplasmic	239	250	0.75
Transmembrane Helix	251	273	0.75
Cytoplasmic	274	284	0.80
Transmembrane Helix	285	302	0.48
Non-Cytoplasmic	303	314	0.55
Transmembrane Helix	315	334	0.57
Cytoplasmic	335	359	0.92