YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|47087189, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	125	0.94
Transmembrane Helix	126	147	0.82
Non-Cytoplasmic	148	155	0.82
Transmembrane Helix	156	175	0.93
Cytoplasmic	176	194	0.87
Transmembrane Helix	195	216	0.88
Non-Cytoplasmic	217	289	0.96
Transmembrane Helix	290	311	0.93
Cytoplasmic	312	319	0.91
Transmembrane Helix	320	342	0.90
Non-Cytoplasmic	343	368	0.93
Transmembrane Helix	369	390	0.91
Cytoplasmic	391	401	0.87
Transmembrane Helix	402	425	0.87
Non-Cytoplasmic	426	453	0.91
Transmembrane Helix	454	476	0.77
Cytoplasmic	477	503	0.84
Transmembrane Helix	504	527	0.92
Non-Cytoplasmic	528	535	0.86
Transmembrane Helix	536	558	0.91
Cytoplasmic	559	574	0.92
Transmembrane Helix	575	597	0.90
Non-Cytoplasmic	598	614	0.87
Transmembrane Helix	615	635	0.93
Cytoplasmic	636	670	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKATSNET QPLTSKKGIS DCNEGEDCKE NGLLIRNPKS ALRLVDDGNK VHPGQGDKEE  60
   61 AAQISNGYSG VQSSGPCSGM GEAEDAQCTA PAATTTTTTT TSTTCGAEGQ QQLMELGDRE 120
  121 TWSKKIDFLL SVIGYAVDLG NVWRFPYICY QNGGGAFLIP YTIMAIFGGI PLFYMELALG 180
  181 QYHRNGCISI WRKICPIFKG IGFAICIIDL YVASYYNTIM AWVFYYLVSS FTTELPWTSC 240
  241 NNAWNTGNCT TYFSKDNISW ALHSISPAEE FYTRQVLQVH RSNGLDDLGG ISWQLTLCLL 300
  301 LIFIIVYFSI WKGVKTSGKV VWVTATFPYV ILFILLVRGA TLPGAWRGVL YYLKPEWQKL 360
  361 LATEVWVDAA AQIFFSLGPG FGVLLAYASY NKFHNNCYQD ALVTSTVNCL TSFVSGFVIF 420
  421 TVLGYMAEMR NEDVSEVAKD MGPSLLFITY AEAIANMPAS TFFAIIFFLM LLTLGLDSTF 480
  481 AGLEGVITGV LDEFPHVWSK RREFFVLGLI IICFLGSLAT LTFGGAYVVK LFEEYATGPA 540
  541 VLTVVFLEAV AVAWFYGITQ FCNDVKEMLG FAPGWYWRVC WVAISPIFLL FVTCSFLSNP 600
  601 PELRLFDYNY PYWTTVVGYC IGTSSIICIP IYMAYRLIIT PGTLKERILK SITPETATEI 660
  661 PFGDIRMNAV