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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|8926217
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHHHHHHDPE GGRKGSAEKN FWKMGKKSKK NEKKEKKPTV STFAMFRYSN WLDRLYMLVG  60
   61 TMAAIIHGAA LPLMMLVFGN MTDSFANAGI SRNKTFPVII NESITNNTQH FINHLEEEMT 120
  121 TYAYYYSGIG AGVLVAAYIQ VSFWCLAAGR QILKIRKQFF HAIMRQEIGW FDVHDVGELN 180
  181 TRLTDDVSKI NEGIGDKIGM FFQSIATFFT GFIVGFTRGW KLTLVILAIS PVLGLSAAIW 240
  241 AKILSSFTDK ELLAYAKAGA VAEEVLAAIR TVIAFGGQKK ELERYNKNLE EAKRIGIKKA 300
  301 ITANISIGAA FLLIYASYAL AFWYGTSLVL SSEYSIGQVL TVFFSVLIGA FSIGQASPSI 360
  361 EAFANARGAA YEIFKIIDNK PSIDSYSKSG HKPDNIKGNL EFKNVHFSYP SRKEVKILKG 420
  421 LNLKVQSGQT VALVGNSGCG KSTTVQLMQR LYDPTDGMVC IDGQDIRTIN VRHLREITGV 480
  481 VSQEPVLFAT TIAENIRYGR ENVTMDEIEK AVKEANAYDF IMKLPNKFDT LVGERGAQLS 540
  541 GGQKQRIAIA RALVRNPKIL LLDEATSALD TESEAVVQVA LDKARKGRTT IVIAHRLSTV 600
  601 RNADVIAGFD DGVIVEKGNH DELMKEKGIY FKLVTMQTRG NEIELENATG ESKSESDALE 660
  661 MSPKDSGSSL IKRRSTRRSI HAPQGQDRKL GTKEDLNENV PPVSFWRILK LNSTEWPYFV 720
  721 VGIFCAIING GLQPAFSIIF SRIIGIFTRD EDPETKRQNS NMFSVLFLVL GIISFITFFL 780
  781 QGFTFGKAGE ILTKRLRYMV FRSMLRQDVS WFDDPKNTTG ALTTRLANDA AQVKGAIGSR 840
  841 LAVITQNIAN LGTGIIISLI YGWQLTLLLL AIVPIIAIAG VVEMKMLSGQ ALKDKKELEG 900
  901 AGKIATEAIE NFRTVVSLTR EQKFEYMYAQ SLQVPYRNSL RKAHIFGVSF SITQAMMYFS 960
  961 YAGCFRFGAY LVANEFMNFQ DVLLVFSAIV FGAMAVGQVS SFAPDYAKAK VSAAHVIMII1020
 1021 EKSPLIDSYS PHGLKPNTLE GNVTFNEVVF NYPTRPDIPV LQGLSLEVKK GQTLALVGSS1080
 1081 GCGKSTVVQL LERFYDPLAG SVLIDGKEIK HLNVQWLRAH LGIVSQEPIL FDCSIAENIA1140
 1141 YGDNSRVVSH EEIMQAAKEA NIHHFIETLP EKYNTRVGDK GTQLSGGQKQ RIAIARALVR1200
 1201 QPHILLLDEA TSALDTESEK VVQEALDKAR EGRTCIVIAH RLSTIQNADL IVVFQNGKVK1260
 1261 EHGTHQQLLA QKGIYFSMIS VQAGAKR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle