YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34099827
Protein type:	Globular with Signal Peptide
Type Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSVSSSSS ISASGFSRSS QELKAPQFGS FKLLDRPTTF VNVSSQRRCA VKPLNAEPKR  60
   61 NGSVVPLAAT IAAPEIAEKV EVEEDYEKLA KELVNGSPLE IMDKALEKFG DDIAIAFSGA 120
  121 EDVALIEYAK LTGRPFRVFS LDTGRLNPET YHFFDQVEKH YGIRIEYMFP DAVEVQALVR 180
  181 NKGLFSFYED GHQECCRVRK VRPLRRALKG LRAWITGQRK DQSPGTRSEI PVVQVDPVFE 240
  241 GLDGGAGSLI KWNPMANVEG QDVWKFLRTM DVPVNSLHSK GYISIGCEPC TRPVLPGQHE 300
  301 REGRWWWEDA TAKECGLHKG NLKQGDAAQL NGNGNGAAHA NGAATVADIF NSENLVNLSR 360
  361 PGIENLLKLE NRKEPWLVVL YAPWCQFCQG MEASYVELAD KLAGSGVKVG KFRADGDQKG 420
  421 FSKQELQLGS FPTILFFPKH SSRPIKYPSE KRDVDSLMTF VNALR

Type	Start	End	Confidence
Signal Peptide	1	19	0.77
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	465	0.99