YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34189346
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APEDLQHSEA RNAPSGTAQV PAAGVPPQPV SSHVQPQPPP PYEDRNPLYP GPLPPGGYGQ  60
   61 PSVLPGGYPA YPGYPQPGYG HPAGYPQPMP PTHPMPMNYG PGHGYDGEER AVSDSFGPGE 120
  121 WDDRKVRHTF IRKVYSIISV QLLITVAIIA IFTFVEPVSA FVRRNVAVYY VSYAVFVVTY 180
  181 LILACCQGPR RRFPWNIILL TLFTFAMGFM TGTISSMYQT KAVIIAMIIT AVVSISVTIF 240
  241 CFQTKVDFTS CTGLFCVLGI VLLVTGIVTS IVLYFQYVYW LHMLYAALGA ICFTLFLAYD 300
  301 TQLVLGNRKH TISPEDYITG ALQIYTDIIY IFTFVLQLMG DRN

Type	Start	End	Confidence
Cytoplasmic	1	133	0.99
Transmembrane Helix	134	155	0.93
Non-Cytoplasmic	156	165	0.87
Transmembrane Helix	166	186	0.92
Cytoplasmic	187	194	0.82
Transmembrane Helix	195	214	0.95
Non-Cytoplasmic	215	221	0.78
Transmembrane Helix	222	242	0.96
Cytoplasmic	243	250	0.85
Transmembrane Helix	251	273	0.92
Non-Cytoplasmic	274	280	0.72
Transmembrane Helix	281	299	0.94
Cytoplasmic	300	320	0.80
Transmembrane Helix	321	339	0.55
Non-Cytoplasmic	340	343	0.53