YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCB4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEARIILLRI QIPWSANRQF SHPPLDFPRF IRASSSSTSQ KPKTYEGPKP RKNLVADFIS  60
   61 KNDDLVRSLP IYVGGASLLA VLFNRTVSGI APVADASSSQ SRADLLALGL AVTNLLTGLV 120
  121 WLSIRPKSIT PVNPKGVECK VVESDLPASM VSELLWAWES LKVATCCKSL VIVYNGICLI 180
  181 QIGMVAESPE DKKTVIVKTD KLMQGSVYRG VMKSKAQSYL ANLSLYPGRS ELPFLPANTQ 240
  241 AVILQPLGDK GIAVIGGNTI RGFTSSDQAW ISSIGEKLDA TLGRYFVDSD EISRVTV

Type	Start	End	Confidence
Cytoplasmic	1	68	0.71
Transmembrane Helix	69	87	0.58
Non-Cytoplasmic	88	104	0.62
Transmembrane Helix	105	124	0.77
Cytoplasmic	125	297	0.55