YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33333172
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVTNMSQPHY CGTGIDDFHT NYKYFHGYFS LIVCILGTIA NTLNIIVLTR REMRSPTNAI  60
   61 LTGLAVADLA VMLEYIPYTV HDYILSARLP REEQLSYSWA CFIKFHSVFP QVLHTISIWL 120
  121 TVTLAVWRYI AVSYPQRNRI WCGMRTTLIT IATAYVVCVL VVSPWLYLVT AIAKFLETLD 180
  181 ASGKTIASVP LSQYILDYNR QDEVTMQVMS STTPDVSWPI PSDSANGTAV SLLSLTTVIP 240
  241 LTTLSTGVTT SSSLGERNVT VYKLYHSALA LHDRQFRNAT FLIYSVLIKL IPCFALTILS 300
  301 VRLIGALLEA KRRRKILACH AANDMQPIVN GKVVTPTQPK SCKLLEKEKQ TDRTTRMLLA 360
  361 VLLLFLVTEF PQGIMGLLNV LLGDAFFLQC YLKLSDLMDI LALINSSINF ILYCSMSRQF 420
  421 RSTFALLFRP RWLDKWLPLS QHDGEGRVGG SGGLGGYGGY GRQRLLHTDA VSKSMAIDLG 480
  481 LTTQVTNV

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.97
Transmembrane Helix	25	48	0.90
Cytoplasmic	49	56	0.91
Transmembrane Helix	57	78	0.88
Non-Cytoplasmic	79	111	0.91
Transmembrane Helix	112	131	0.93
Cytoplasmic	132	146	0.85
Transmembrane Helix	147	168	0.90
Non-Cytoplasmic	169	284	0.89
Transmembrane Helix	285	306	0.89
Cytoplasmic	307	356	0.97
Transmembrane Helix	357	378	0.88
Non-Cytoplasmic	379	396	0.79
Transmembrane Helix	397	416	0.84
Cytoplasmic	417	488	0.92