YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|33333170
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGNNETEP LYCGSGMDNF HTSYKNMHGY VSLVVCILGT IANTLNIIVL TRREMRSPTN  60
   61 AILTGLAVAD LAVMLEYIPY TIHDYILTDS LPREEKLSYS WACFIKFHSI FAQVLHTISI 120
  121 WLTVTLAVWR YIAVGYPQKN RVWCGMRTTI ITITTAYVVC VLVVSPSLYL ITAITEYVDQ 180
  181 LDMNGKVINS IPMTQYVIDY RNELMSARTA ALNATPTSAP LNETVWLNAS TLLTSTTTVA 240
  241 PPTPSPVVRN VTVYRLYHSD LALHNASLQN ATFLIYSVVI KLIPCIALTI LSVRLILALL 300
  301 EAKRRRKKLT SKPATPAASN GTKSPANGKS ADRPRKNSKT LEKEKQTDRT TRMLLAVLLL 360
  361 FLITEFPQGI MGLLNAVLGD VFYLQCYLRL SDLMDILALI NSSINFILYC SMSKQFRTTF 420
  421 TLLFRPKFLD KWLPVAQDEM AAARAERSAV APVLEKGRQQ PQVVMASTTT NITQVTNL

Type	Start	End	Confidence
Non-Cytoplasmic	1	26	0.97
Transmembrane Helix	27	50	0.89
Cytoplasmic	51	59	0.87
Transmembrane Helix	60	80	0.91
Non-Cytoplasmic	81	109	0.94
Transmembrane Helix	110	133	0.87
Cytoplasmic	134	149	0.87
Transmembrane Helix	150	173	0.87
Non-Cytoplasmic	174	273	0.98
Transmembrane Helix	274	298	0.89
Cytoplasmic	299	352	0.98
Transmembrane Helix	353	374	0.88
Non-Cytoplasmic	375	392	0.79
Transmembrane Helix	393	412	0.84
Cytoplasmic	413	478	0.93