YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DH12A_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESFNVVETL QPAERALFWV GALITASLAL YVVYKTITGF RIWVLGNGDL LSPKLGKWAV  60
   61 VTGATDGIGK SYAEELARRG FSMMLISRSQ EKLDDVAKSL ESTYKVETKT IAVDFSQIDV 120
  121 YPKIEKGLAG LEIGILVNNV GISYSYPEFF LHIPDLENFI TTMINVNITS VCQMTRLVLP 180
  181 RMEARAKGVI LNISSASGMF PVPLLTIYSS TKAFVDFFSR GLQTEYKCKG IIIQSVLPFF 240
  241 VATKMTKIRK PTLDKPTPER YVAAELNTVG LQDQTNGYFP HAVMGWVTTI LAPIDLVLNL 300
  301 GLRMNKAQRG GYLRRRKLR

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.64
Transmembrane Helix	16	34	0.92
Cytoplasmic	35	187	0.71
Transmembrane Helix	188	208	0.92
Non-Cytoplasmic	209	281	0.96
Transmembrane Helix	282	302	0.93
Cytoplasmic	303	319	0.95