YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	BOK_CHICK
Protein type:	Transmembrane
Type Confidence:	0.90
Topology Confidence:	0.39
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEVLRRSSVF AAEVMEVFDR SPTDKELVSQ AKALCRDYIN SRLIRAGVSW SKPEHNTPVP  60
   61 GGKLAEVSAI LLRLGDELEY IRPNVYRNIA RQLNISLHSE TVVTDAFLAV AAQIFTAGIT 120
  121 WGKVVSLYAV AAGLAVDCVR HAQPAMVHTI VDCLGEFVRK TLVTWLKRRG GWADITKCVV 180
  181 STDPSLRSHW LVAAVCSFGH FLKAIFFVLL PER

Type	Start	End	Confidence
Cytoplasmic	1	100	0.61
Transmembrane Helix	101	119	0.39
Non-Cytoplasmic	120	188	0.76
Transmembrane Helix	189	210	0.82
Cytoplasmic	211	213	0.65