YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62359088, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRHRVAVVS DFFYPGFGGV EVHIYSLGQC LMRRGHKVIV ITRAYGDTCG VRYLTNGMKV  60
   61 YYLPLMAVKL PAGSVTLPTM YLTFATMRSI FIRERITVVH GHQNTSNLCH EALFHAGTLG 120
  121 LKTCFTDHSL FGFADVSSIH INKVCEWSLR NVDQVICVSN TSRENTVLRA KIDPQRVSVI 180
  181 PNATDCSFFT PPDDMKYKSW ASKVENEGLT IVVIGRLVYR KGSDLFVDVI PEICKRHPNI 240
  241 RWIVGGDGPR RSQFQQMIER HDLMDRVKML GSLPHSGVRN VLIQGQIFLN CSLTEAFCIA 300
  301 LIEAASCGLL CVSTRVGGVP EVLPPNMLLL AEPDPSSIIT TLEEAIASVP YISPWELHDN 360
  361 VRRFYRWDWV AERTERVYDK IMCTKSPSLY ERLMNYASVG CVYGVICWLL CIGDWLMLTF 420
  421 LEFWFPSELI DIAPDFPLEL YSRNREKLQV VGSPS

Type	Start	End	Confidence
Cytoplasmic	1	7	0.66
Transmembrane Helix	8	27	0.49
Non-Cytoplasmic	28	64	0.76
Transmembrane Helix	65	85	0.62
Cytoplasmic	86	395	0.75
Transmembrane Helix	396	418	0.85
Non-Cytoplasmic	419	455	0.82