YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10441744
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.93
Transmembrane Helix	7	28	0.88
Cytoplasmic	29	40	0.78
Transmembrane Helix	41	60	0.93
Non-Cytoplasmic	61	70	0.82
Transmembrane Helix	71	90	0.88
Cytoplasmic	91	99	0.80
Transmembrane Helix	100	121	0.91
Non-Cytoplasmic	122	130	0.80
Transmembrane Helix	131	152	0.90
Cytoplasmic	153	467	0.99
Transmembrane Helix	468	487	0.83
Non-Cytoplasmic	488	498	0.68
Transmembrane Helix	499	520	0.84
Cytoplasmic	521	535	0.64
Transmembrane Helix	536	556	0.80
Non-Cytoplasmic	557	559	0.51
Transmembrane Helix	560	580	0.67
Cytoplasmic	581	588	0.54
Transmembrane Helix	589	612	0.91
Non-Cytoplasmic	613	614	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLTDFYHV MTAMVPLYVA MILAYGSVKW WKIFTPDQCS GINRFVALFA VPLLSFHFIS  60
   61 TNDPYNMNLR FITADSLQKV IVLVVLALWT KLSKRGCLEW TITLFSLSTL PNTLVMGIPL 120
  121 LKGMYGDYSG SLMVQVVVLQ CIIWYTLMLF MFEYRGAKLL ISEQFPDTAG SIVSIHVDSD 180
  181 IMSLDGRQPL ETEAAIKEDG KLHVTVRKSN ASRSDIFSRR SQGLSSTTPR PSNLTNAEIY 240
  241 SLQSSRNPTP RGSSFNHTDF YSMMAAGRNS NFGASDVYGL SASRGPTPRP SNFEEEHGGS 300
  301 NKPRFHHYHA PGGATHYPAP NPGMFSPTTA ASKGVSANAN NAAAAAAKKP NGQAQQKAED 360
  361 GRDLHMFVWS SSASPVSDVF GGHDYGAHDL KDVRVAVSPG KVEGQRENQE DYNLERDDFS 420
  421 FGNRGLDRER NSHEGEKGGF DGKPKAMPPT SVMTRLILIM VWRKLIRNPN TYSSLIGLIW 480
  481 SLVSFRWNVK MPLIIAKSIS ILSDAGLGMA MFSLGLFMAL QPRIIACGNS IATFSMAVRF 540
  541 LTGPAIMAAA SIAVGIRGTL LHIAIVQAAL PQGIVPFVFA KEYNVHPEIL STGVIFGMLI 600
  601 ALPITLVYYI LLGL