YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|28277721, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.75
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGLKPSDVP PPLTVKVLSA GTAACIADLV TFPLDTAKVR LQIQGEKAVT GAAKGIRYKG  60
   61 VFGTISTMMR TEGPRSLYNG LVAGLQRQMA FASIRIGLYD NVKSFYTRGK DNPNVAVRIL 120
  121 AGCTTGAMAV SMAQPTDVVK VRFQAQMNLQ GVGRRYNGTM QAYRQIFQLE GLRGLWKGTL 180
  181 PNITRNALVN CTELVSYDLI KEAILKHRLL SDNLPCHFVS AFGAGFITTV IASPVDVVKT 240
  241 RYMNSPPGQY SSSTNCAWTM LTKEGPTAFY KGFVPSFLRL GSWNVVMFVS FEQLKRAMMV 300
  301 SRNRIEAAA

Type	Start	End	Confidence
Cytoplasmic	1	213	0.61
Transmembrane Helix	214	235	0.62
Non-Cytoplasmic	236	274	0.85
Transmembrane Helix	275	291	0.56
Cytoplasmic	292	309	0.59