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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|19698771
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMLPRLILL PLLLILRISW SDAVPLQQFS PDPDDSIENC GGENGAPLMT PCKSAIILDA  60
   61 QTSTTLKCED DEPMSWWTSQ SQYVHVKSFD NTEDPARPFG TSLHLIEVTA DYVAAYYCVK 120
  121 TSKFSQIAKE EQSDEAMIEL VNQGYASSIY VYVNDPDTKL VDSHNVVTAR QYTDVVIPCK 180
  181 PAMPDTEVLL ETSNGEMHSS KSVGRYDPQR GFTIEIRSIV DGGDYYCRPN PPFPHNEEEM 240
  241 TSIEVRFIGN GHIDKDGKPL PKPVIRSSVE HHVFTDTNFT LDCEQSAYVE SVYGMEWFTP 300
  301 SRDENRIFAS QSRTDPKTRN STHQTGRSTL TVLNAQPSDT GLYKCVTTDN SNQNVQRATY 360
  361 RIKVLKQNES YLNVGEPSGH YNVQEYANRT IQMTANFEGF PTPSFSWFKP DGTEVRQSEN 420
  421 NFKILSTELS TMLQVLNAQL QDSGTYVLRG SNSFGVVQRE YNVSVMDAPA LKMSDAYVQV 480
  481 GSVARLECTV RSYPPAIVTF FFRPCSLEPQ WPTCSVLNQN FSLPSEQEKY QFQTRPRPGK 540
  541 LSVERIYEVS FLPTEPGILT CIAQNIIDGK ERRTLTKAHV LLGNISENMT IYGFDKDHKI 600
  601 AKEDNVNFTC EALAYHFDGN LKWFINGEDL KESDSVHIET SHTKYSYKST VHITTISDRD 660
  661 RGTYECRAYH NDKDAVYSSR EIDLYVHDPS APQWTNGGQE GHSKIKRKLS QTLELECAST 720
  721 AVPVAIVRWF KDDKEVTESK LRHIIEKESK LLITHLYPGD EGVYKCVVEN RLDRIERSFT 780
  781 VVISDLPGIS MAWVWFGVIL FLILIGLCVF LAVRYQKEHK RHLALKAAGL ANFEEGAVGH 840
  841 INPDLTLDEQ AELLPYNREF EFPRENLKLG KQLGAGAFGV VLKGEAKGIR REEPTTTVAV 900
  901 KMVKATADNE VVRALVSELK IMVHLGQHLN VVNLLGAVTK NIAKRELMVI VEYCRFGNIQ 960
  961 NFLLRNRKCF INQINPDTDH IDPSIITQRM SDNYELHRNS DNDPRSGTRA GRTGSGTATY1020
 1021 SYDRQMDTCA TVMTTVPEDD QIMSNNSVQP AWRSNYKTDS TEAMTVTTVD LISWAFQVAR1080
 1081 GMDYLSSKKV LHGDLAARNI LLCEDNVVKI CDFGLARSMY RGDNYKKSEN GKLPIKWLAL1140
 1141 ESLSDHVFST YSDVWSYGIV LWEMFSLAKV PYPGIDPNQE LFNKLNDGYR MEKPKFANQE1200
 1201 LYEIMLECWR KNPESRPLFA ELEKRFANML GEDVASHCLD LNNPYMQSNI EYMKKQSTDY1260
 1261 LALMGSPDEL APAAPRYVNG HIVPDIRIEE LPDDYMEMSR DSDPDACTAI FSPTRLEGES1320
 1321 SDFPDFSSET TFNFPGARQS PTLSNNLNSG SSKPLRKKNG MPTVDVADQA PEEIPMLHRS1380
 1381 STGSDGSPEQ GRRFNQALKQ QYVTPTPSPR HHVETKLNGE PSENYVNMKP PRKNIPGKTT1440
 1441 TGGGGAAAGA STEAFSNPSY QPLSTVNEKE QRRY

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle