YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|3252868, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.63
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	9	0.56
Transmembrane Helix	10	30	0.57
Non-Cytoplasmic	31	61	0.93
Transmembrane Helix	62	84	0.89
Cytoplasmic	85	90	0.85
Transmembrane Helix	91	112	0.93
Non-Cytoplasmic	113	129	0.90
Transmembrane Helix	130	153	0.88
Cytoplasmic	154	198	0.92
Transmembrane Helix	199	220	0.84
Non-Cytoplasmic	221	235	0.80
Transmembrane Helix	236	255	0.92
Cytoplasmic	256	261	0.87
Transmembrane Helix	262	284	0.91
Non-Cytoplasmic	285	294	0.81
Transmembrane Helix	295	317	0.89
Cytoplasmic	318	332	0.92
Transmembrane Helix	333	352	0.95
Non-Cytoplasmic	353	353	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALSSKTLKS TLVFLSIIFL CFSLILAHGG IDDGDEEEET NQPPPATGTT TVVNLRSKGL  60
   61 VLVKIYCIII LFFSTFLAGI SPYFYRWNES FLLLGTQFSG GIFLATALIH FLSDANETFR 120
  121 GLKHKEYPYA FMLAAAGYCL TMLADVAVAF VAAGSNNNHV GASVGESRED DDVAVKEEGR 180
  181 REIKSGVDVS QALIRTSGFG DTALLIFALC FHSIFEGIAI GLSDTKSDAW RNLWTISLHK 240
  241 VFAAVAMGIA LLKLIPKRPF FLTVVYSFAF GISSPIGVGI GIGINATSQG AGGDWTYAIS 300
  301 MGLACGVFVY VAVNHLISKG YKPLEECYFD KPIYKFIAVF LGVALLSVVM IWD