YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|2314662, gi\|1...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGRNQGAYLD PSESILMLMV AFLLVLLNAF FVLSEFALVK VRKTRLEELV KIGNSNAKLA  60
   61 LKMSQRLDTY LSATQLGITL SSLALGWVGE PAIAKLLAAL FESMDLRENP IFIHSMSVVI 120
  121 AFLSITFLHV VLGEIVPKSL AIAKSEKATL FAARPLHVFW VVFYPVVRLF DVIAHFFLKK 180
  181 MGINPKEHDG THSEEELKII VGESLREGII DSVEGEIIKN AXDFSDTSAK EIMTPRKDMV 240
  241 CLDEENSYEE NIDIVLKGHF TRYPYCKGSK DNIIGMVHIR DLLSRSIFTP KMHDFNQIVR 300
  301 KMIIVPESAS ISQILIKMKK EQIHTALVID EYGGTAGLLT MEDIIEEIMG EISDEYDLKQ 360
  361 EGINKLEEGV FELEGMLDLE SVEEALHIEF DKECEQVTLG GYVFSLLERM PMEGDTIVSH 420
  421 GYSFEVLSVD GARIKRLKAV KQDQGENEA

Type	Start	End	Confidence
Non-Cytoplasmic	1	14	0.86
Transmembrane Helix	15	38	0.88
Cytoplasmic	39	69	0.85
Transmembrane Helix	70	89	0.82
Non-Cytoplasmic	90	110	0.72
Transmembrane Helix	111	133	0.92
Cytoplasmic	134	155	0.68
Transmembrane Helix	156	175	0.71
Non-Cytoplasmic	176	449	0.79