YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54650686
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	141	0.81
Transmembrane Helix	142	162	0.82
Cytoplasmic	163	174	0.73
Transmembrane Helix	175	196	0.79
Non-Cytoplasmic	197	207	0.79
Transmembrane Helix	208	229	0.93
Cytoplasmic	230	238	0.77
Transmembrane Helix	239	258	0.91
Non-Cytoplasmic	259	274	0.76
Transmembrane Helix	275	296	0.91
Cytoplasmic	297	305	0.90
Transmembrane Helix	306	328	0.87
Non-Cytoplasmic	329	334	0.73
Transmembrane Helix	335	355	0.93
Cytoplasmic	356	365	0.83
Transmembrane Helix	366	385	0.93
Non-Cytoplasmic	386	396	0.80
Transmembrane Helix	397	419	0.92
Cytoplasmic	420	447	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGRLLVAVGV LMILGLQGVR SEYGDLAGNW LVDYDRDELN FFEDSTWSVD LHIYNVLPKD  60
   61 SSLDYYFVVY SKDDRRASSP PLEIKKEDFD LLGSWRGALY VTGVRFGYSS LEVELKSGAV 120
  121 TETYPKPLPI TVLRTQVVDE RITTYVSAAL ALLMFLNLGT VLDMQRLAGI ICRPVGPVVG 180
  181 VVSRFVLMPA VGFGLGRALW PDSWPLQLAL FYTALSPSGG LANVCAVFLK GNINLSVATT 240
  241 TINSLLALAL LPIWILVLGR ILYEDDELTV PFGQLSGGAA ALVACLAIGV LLRLCLPRTT 300
  301 RFIFRFLKPL SVVLSLCLVG LTVGLNSFVF YEFTWQILVA AVCLPLAGYL STYLLSKILC 360
  361 RSSTDALTLA IEASVLNMTM PIVLLQSSQL QQPQLDLVLV VPIASSLISL VLVVLFYGIR 420
  421 RCLGCNRQQD ADAFDHKKLL AEQEGDV