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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|54650678
Protein type: Transmembrane
Type Confidence: 0.81
Topology Confidence: 0.61
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEADLKNLS QNSDGDQELL LHQTTQSLLM ASSIMFVGNQ GGPGGSAGGV APPGPVSLPL  60
   61 PLSINMPHHH VHAMPYNVDE LLRENNALHA KIKELSLERD RLLCEVSNLR LELDMSELKR 120
  121 LPVDLDDNFP QKRLERSGST QYELAGAQQP GSANASTCTG SGSVGGYVYL QNHYAPGAHS 180
  181 SSAAINYPAQ QHPQMVYQIQ QYPTCHQQQQ QQHLQQQQHL HQTGAGHYMQ VTATGGGQYH 240
  241 HHHMLHGHGH HAHHHGGAVV IAGSGVGTGL GSGATSVIMQ HQQQQQQQQN MHKKNSIRNG 300
  301 GDVLKRTRAQ SAYELSQDLL EKQIELLERK YGGVRARNAA VTIQRAFRHY MMVKKFASIT 360
  361 AMAKAEKRLS RRMVVTASSL GLAEEGASSS SAYGSATESQ LTEQQQQQQA QQQQQPRVTI 420
  421 MAGPAGAASP GLSRTPPTRS LSMRERRQLD CSPIPRSQSG ASPASISSST VSTSALASHP 480
  481 HVNLLHAAEP HYYNAQALPQ GAAYYTSYHG SPHDLSYASS ADTSLNASWV NTSGHSPHTP 540
  541 YYSAAQIYMR PKGGSTTPTP SCSGSTGSGS GGSGSGSSKK VPPEVPKRTS SITAQQQTQL 600
  601 LLLQRQTPPP PSLLRTNGLC KTAENGSLTS VQSSGSDSSV TSAERNLNSD LGSDRSNSPH 660
  661 TWKRGTALNS SQQFSTHSAD SAGAVSGGGV GVAGGAGVYA AQMQAAVAAA TAAGGMPPAD 720
  721 DHAISSHTSA AQYEQHEQQQ HEQQQLQAAA AAAGVAQNYK MSETIRKRQY RVGLNLFNKK 780
  781 PEKGITYLIR RGFLENTPQG VARFLITRKG LSRQMIGEYL GNLQNQFNMA VLSCFAMELD 840
  841 LSGRQVDVAL RKFQAYFRMP GEAQKIERLM EIFSQRYCEC NADIVGRLRS SDTIFVLAFA 900
  901 IIMLNTDLHT PNLKPERRMR VEDFIKNLRG IDDCHDIDKD MLMGIYDRVK SDEFKPGSDH 960
  961 VTQVMKVQAT IVGKKPNLAL PHRRLVCYCR LYEIPDVNKK ERPGVHQREV FLFNDLLVIT1020
 1021 KIFSKKKTSV TYTFRNSFPL CGTVVTLLDM PNYPFCIQLS QKVDGKILIT FNARNEHDRC1080
 1081 KFAEDLKESI SEMDEMESLR IEAELERQKS ARNRAPGNAE NRDSGVADVE VCPCPYQQGS1140
 1141 QASGEQAPNS ADNSQQLKRS ALSNSLLDMH EQFGNEKPQR RGSVGSLDSG MSISFQSTTT1200
 1201 SSASRENAAA IAAAANAAAA AKMRFNMPPT AAIATPSNVY AAPGMQAYTH ANFVQQSQAA1260
 1261 YMLQQQQMLQ QQAQMQAQAQ AQAQAQAQAQ AQAQAQAQAQ PLTGRIPGRE RKASRTDENG1320
 1321 RSTEV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle