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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|54650644
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKDGRELKT DTGSHRIMLP AGGLFFLKVI HSRRESDAGT YWCEAKNEFG VARSRNATLQ  60
   61 VAFLRDEFRL EPANTRVAQG EVALMECGAP RGSPEPQISW RKNGQTLNLV GNKRIRIVDG 120
  121 GNLAIQEARQ SDDGRYQCVV KNVVGTRESA TAFLKVHVRP FLIRGPQNQT AVVGSSVVFQ 180
  181 CRIGGDPLPG VLWRRTASGG NMPLRRVHVL EDRSLKLDDV TLEDMGEYTC EADNAVGGIT 240
  241 ATGILTVHAP PKFVIRPKNQ LVEIGDEVLF ECQANGHPRP TLYWSVEGNS SLLLPGYRDG 300
  301 RMEVTLTPEG RSVLSIARFA REDSGKVVTC NALNAVGSVS SRTVVSVDTQ FELPPPIIEQ 360
  361 GPVNQTLPVK SIVVLPCRTL GTPVPQVSWY LDGIPIDVQE HERRNLSDAG ALTISDLQRH 420
  421 EDEGLYTCVA SNRNGKSSWS GYLRLDTPTN PNIKFFRAPE LSTYPGPPGK PQMVEKGENS 480
  481 VTLSWTRSNK VGGSSLVGYV IEMFGKNETD GWVAVGTRVQ NTTFTQTGLL PGVNYFFLIR 540
  541 AENSHGLSLP SPMSEPITVG TRYFNSGLDL SEARASLLSG DVVELSNASV VDSTSMKLTW 600
  601 QIINGKYVEG FYVYARQLPN PIVNNPAPVT SNTNPLLGST STSASASASA SALISTKPNI 660
  661 AAAGKRDGET NQSGGGAPTP LNTKYRMLTI LNGGGASSCT ITGLVQYTLY EFFIVPFYKS 720
  721 VEGKPSNSRI ARTLEDVPSE APYGMEALLL NSSAVFLKWK APELKDRHGV LLNYHVIVRG 780
  781 IDTAHNFSRI LTNVTIDAAS PTLVLANLTE GVMYTVGVAA GNNAGVGPYC VPATLRLDPI 840
  841 TKRLDPFINQ RYPINQDHVN DVLTQPWFII LLGAILAVLM LSFGAMVFVK RKHMMMKQSA 900
  901 LNTMRGNHTS DVLKMPSLSA RNGNGYWLDS STGGMVWRPS PGGDSLEMQK DHIADYAPVC 960
  961 GAPGSPAGGG TSSGGSGGAG SGASGGDDIH GGHGSERNQQ RYVGEYSNIP TDYAEVSSFG1020
 1021 KAPSEYGRHG NASPAPYATS SILSPHQQQQ QQQPRYQQRP VPGYGLQRPM HPHYQQQQHQ1080
 1081 QQQAQQTHQQ HQALQQHQQL PPSNIYQQMS TTSEIYPTNT GPSRSVYSEQ YYYPKDKQRH1140
 1141 IHITENKLSN CHTYEAAPGA KQSSPISSQF ASVRRQQLPP NCSIGRESAR FKVLNTDQGK1200
 1201 NQQNLLDLDG SSMCYNGLAD SGCGGSPSPM AMLMSHEDEH ALYHTADGDL DDMERLYVKV1260
 1261 DEQQPPQQQQ QLIPLVPQHP AEGHLQSWRN QSTRSSRKNG QECIKEPSEL IYAPGSVASE1320
 1321 RSLLSNSGSG TSSQPAGHNV 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle