YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54650606
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.34
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPSQVSNGTE VQSLNSRKKQ SVPNYKIVAN KFKMMQYLVV SLALCATICS AAQTRNMPIQ  60
   61 AIAYLIGPVQ SDNTQVKGNV TFTQNDCGQN VHVRVQLEGL KEGKHGFHIH EKGDLTNGCI 120
  121 SMGAHYNPDK VDHGGPDHEV RHVGDLGNLE ANSTGIIDVT YTDQVITLTG KLGIIGRGVV 180
  181 VHELEDDLGL GNHTDSKKTG NAGGRIACGV IGINSDVDEW PCRDGGAGAL RYSFSILTVI 240
  241 VALIMARSLD

Type	Start	End	Confidence
Cytoplasmic	1	36	0.53
Transmembrane Helix	37	52	0.34
Non-Cytoplasmic	53	250	0.56