YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|54650598
Protein type:	Transmembrane
Type Confidence:	0.69
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQELDISIPS TDFASQLLLL FFYNKMQSQR FLFVAILACF LVTIKSTPLS DISYSDESTS  60
   61 VNEKTQKRPD DDSEFDGFPF REDDDSLQDS SREMSVQDHN WDVLIFTQQW PVTTCYHWRE 120
  121 ENPDQECSLP QKKEFWTIHG IWPTKLHQMG PNFCNNSANF DPSKLNPIED RLETFWPDLK 180
  181 GMDSTEWLWK HEWQKHGTCA MLVEELDNEL KYFEQGLTWR EEYIMSRILD ASDIHPDSNN 240
  241 TVAAINNAIV KALGKNPSIH CLYDGKHGIS YLSEIRICFS KSLELIDCDG IKQGDAVPVG 300
  301 VPGGTIITNC HIGSLVHYPS LVPPLQRKSH WKLPLVNVYK LLQFLMWFTL

Type	Start	End	Confidence
Cytoplasmic	1	29	0.61
Transmembrane Helix	30	49	0.61
Non-Cytoplasmic	50	350	0.96