YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PFA4_CANAL
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVQLKWPIL GVIIPCIIIF SLSYGSHYFI LRHHLTMKQQ LIYEFYVTMI WISYLLAIYT  60
   61 NPGRVPKNYK PSLASSTRIE QTEDDSDGLG LESREDETLI REEPISGDRC EWIRYCKKCN 120
  121 NYKPPRSHHC KICQQCVLQM DHHCPWTLNC VGNNNLPHFM RFLGWIIWGT GYLMIQLIKL 180
  181 IINYYENSNM PHYLFNKTEL VAIIAITPLN FFVFASILVL FIRCLINICK GMTQIEIWEW 240
  241 ERLELQWSSK RLWRLIRFNY GRLHKGKPFP ELNTWTNTTN NVNYNDNDDD GDEDVELINL 300
  301 ATNNNEDSTI VPQNFTIDDL IFPYNLGIWK NLVNALGYPY MWLIPFGKPK SNGYQPQISQ 360
  361 DYKQDDQLNL PWPPDGIRQK EIEINVLQQQ GYQRDREEED EEELRSIRNY QELRRRLDPR 420
  421 LNVQRSDFIN DMGEGLTDFG VDEDSD

Type	Start	End	Confidence
Cytoplasmic	1	8	0.80
Transmembrane Helix	9	31	0.90
Non-Cytoplasmic	32	41	0.82
Transmembrane Helix	42	60	0.88
Cytoplasmic	61	161	0.95
Transmembrane Helix	162	182	0.92
Non-Cytoplasmic	183	200	0.90
Transmembrane Helix	201	222	0.94
Cytoplasmic	223	446	0.95