YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573587
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	92	0.77
Transmembrane Helix	93	110	0.45
Non-Cytoplasmic	111	128	0.58
Transmembrane Helix	129	148	0.68
Cytoplasmic	149	154	0.75
Transmembrane Helix	155	175	0.86
Non-Cytoplasmic	176	181	0.65
Transmembrane Helix	182	203	0.88
Cytoplasmic	204	212	0.84
Transmembrane Helix	213	236	0.91
Non-Cytoplasmic	237	256	0.94
Transmembrane Helix	257	277	0.93
Cytoplasmic	278	355	0.98
Transmembrane Helix	356	376	0.90
Non-Cytoplasmic	377	402	0.89
Transmembrane Helix	403	424	0.92
Cytoplasmic	425	430	0.86
Transmembrane Helix	431	450	0.95
Non-Cytoplasmic	451	456	0.84
Transmembrane Helix	457	478	0.89
Cytoplasmic	479	488	0.86
Transmembrane Helix	489	510	0.91
Non-Cytoplasmic	511	516	0.86
Transmembrane Helix	517	539	0.93
Cytoplasmic	540	547	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLFEKNTTP DQNLGEDQNQ NQNQNHSNHS INNDGNDDKK DFISHKENYL EDSTSSEFDM  60
   61 VGLEANDTIL HNKMKLINDA IDEIGFTPYH LKLFFLNGMG YCTDCMLTYL ESSVRTFINY 120
  121 QFGYKFPVSN ECYAGGMILG ALVWGFGADL IGRRLAFNLS LLLSAIFTIM TGMMGNMASY 180
  181 CLFVLLSSFA AGGNLVLDTC VFLEYLPHKD QWLLTFFAFF WGIGQTIAVA LAYAFLPNNS 240
  241 CESADYCPSH INRGWRYVFY TNGSIVLAMA ILRLTVVRLK ETPKFLVANN RDAEAVEVLQ 300
  301 EIAHKYNRKC SLTLEQLLEC GEIESNDDYR KHFSFGGTLS LMFQHLKILF ATKKSAWSTS 360
  361 LLFFSWACLG IAYPLYSAFL PEYLATRGAN ISADTTSGVY RDLVISNVSS VGGPIIAGLL 420
  421 LYLLPVLGRK GVLFIGGVTT MALLFGYTAV RTRAQNVGLT SAVYCALYIY YGVMYAYTPE 480
  481 VMPSAARATG NCLCLFFTRI STAMVPIIAW YSDTSSAVPI WICGALVGVI GIVALALPFE 540
  541 PSKQRVV