YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68469252, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	164	0.99
Transmembrane Helix	165	186	0.92
Non-Cytoplasmic	187	199	0.78
Transmembrane Helix	200	222	0.88
Cytoplasmic	223	231	0.79
Transmembrane Helix	232	251	0.95
Non-Cytoplasmic	252	258	0.79
Transmembrane Helix	259	280	0.91
Cytoplasmic	281	290	0.80
Transmembrane Helix	291	312	0.93
Non-Cytoplasmic	313	322	0.79
Transmembrane Helix	323	343	0.93
Cytoplasmic	344	398	0.97
Transmembrane Helix	399	421	0.86
Non-Cytoplasmic	422	437	0.76
Transmembrane Helix	438	457	0.96
Cytoplasmic	458	477	0.95
Transmembrane Helix	478	498	0.93
Non-Cytoplasmic	499	505	0.84
Transmembrane Helix	506	528	0.90
Cytoplasmic	529	535	0.77
Transmembrane Helix	536	558	0.86
Non-Cytoplasmic	559	572	0.82
Transmembrane Helix	573	595	0.94
Cytoplasmic	596	610	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNNTNSNHN DIAPEATITQ NTTTSVSNDE LQHITNNNNV NVQSYVGPTD SVESSSNTAD  60
   61 EENEINSFNA QNVKDYEANV GGELPPDDEL SRIESNTELS RRATRSIMNT ESLLRTASQS 120
  121 SKPLPPMGGG KEYPPMLGSR DPYVVAFDGP DDPDHPHNYP TWKKILYCAS VGLAALSVSM 180
  181 GSAMFSQASA DIMQIYHIGW TPATLTTSLF VFGFASGPVI YGPLSELFGR KLVMVPSCLG 240
  241 YVCFSFAVAT AKDIQTIMIC RFFAGFIGAA PLVVAPAVMA DMFNNRYRGT AIAIFSMLLF 300
  301 GGPMLAPILG AFTVKNSALG WRWTSYFCGI IGSLALFMNT FLLQETHHPL ILTRRAEELR 360
  361 RRTGNWGIYA PHEELKLSMK EIVENNIARP LKMLFTEPIL FLVSLYNAFI YGMLYLFLTA 420
  421 IPLIFLGEYH FVQGVAELPY LAMLIGILIG GGMIMLFEKR YIKAMEDNGG KIIPEKRLEP 480
  481 MMVGGFTFVI GIFWLGWTGN YPQHVHWIVP VIGAAFVGNG LMLIFLPCFN YIIDCYLLYA 540
  541 ATALAGNTFI RSAFGAVFPL FARQMFTNLT IKWASTLLGC IGILLLPMPF VFYYYGKSLR 600
  601 HKSKFAFVLE