YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76573596
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRLGLTRSF RATSASLKTV RVGIPSNIAT RSPLIYSSIR FNSSTTTSGT EIQDKLTSFD  60
   61 DTTTSAILEN VTNLHSDQLG YLQSIGLAQG WGPTSLIERL LEVTHVYTGL PWWGTIVVAT 120
  121 IAVRLVLFPL YVRASSNATK MSKIKPQIDE LLQQIKTGDT VDQMRAMEKR RLIMKENGVS 180
  181 TLATLFPAVQ LPLAYGFFQA LRKMANHNVE GFSDQGYAWF QNLIEVDPYL GLQAISAAAI 240
  241 IAVVRVGGET GQHAMAAGMK KVMTVVPIAS IFITKGFASA IILYFAVNSI FSLIQSSLFK 300
  301 SSWFRKIAGM PPKLSLAEMQ ANNPKANQSI KDMVSKFVDD SKEKSIKQAR ETNKKLEATQ 360
  361 RRKDSVNQGF IKRH

Type	Start	End	Confidence
Non-Cytoplasmic	1	109	0.65
Transmembrane Helix	110	132	0.83
Cytoplasmic	133	176	0.94
Transmembrane Helix	177	198	0.86
Non-Cytoplasmic	199	228	0.93
Transmembrane Helix	229	248	0.93
Cytoplasmic	249	264	0.83
Transmembrane Helix	265	287	0.88
Non-Cytoplasmic	288	374	0.81